PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040534
Common NameLOC102585472
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 197aa    MW: 21422.5 Da    PI: 10.4196
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040534genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-193165135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  PGSC0003DMP400040534 31 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 65
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4922561IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-142575IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-122665No hitNo description
Gene3DG3DSA:3.30.50.108.1E-153064IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.68E-123065No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003208.2E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVDLSDKGLG SEEMSSGVTS PETSQSNVKT CADCGTTKTP LWRGGPAGPK SLCNACGIKS  60
RKKRRAFLGL NNEEKKSKKS VALGHKNHEA QHHLNQSCSS SSNSEDSKSS NFVKNIVSSS  120
LKKKLLPFGK EEVIMQRPRS RSTQKRKLGE VEQAAFLLMA LSCGSFYTQG RMKMDKERKN  180
EKCCTLGSKS STLWVG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345975.11e-142PREDICTED: GATA transcription factor 17-like isoform X4
RefseqXP_006345974.11e-142PREDICTED: GATA transcription factor 17-like isoform X3
TrEMBLM1C5G51e-142M1C5G5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602411e-129(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-34GATA transcription factor 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]